PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 468aa    MW: 52621.9 Da    PI: 9.1726
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494480.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.3e-16306351555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  Er+RRd+iN+++ +L+el+P++      K +Ka++L  A+eY+k Lq
  XP_004494480.1 306 HNSSERKRRDKINKKIRTLKELIPNC-----HKTDKASMLDDAIEYLKTLQ 351
                     9************************9.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.644301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-19305373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-18305359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-15306355No hitNo description
PfamPF000101.9E-13306351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-17307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MTTNSSHLAS LNDKDFLELV WENGQILGAK VTSSNRTTTQ NTPLCIGYST NPSNNKEDVI  60
INNTTKRRTN SNSSLLNHFS AQNLSSSHID FQSSQSKTFH KPNEKFQQPH MYSTPLKKQR  120
LDYSNSKKQN LGCDQRTGIV NFSNFSIPAM FLKSNNHQNS TRINVSKEVV IESAKDSSQQ  180
HGVRKFQQQK TLTLTAANKL SNHDEHSETA ASHKSTLDDQ YNNNQIQKSE ALKGKRKACG  240
IEQPSSVCSL EASNDPNFSF KRHDEDTVDT NDSPYLSDDD EETPENMIKE KLAREGKRSF  300
KNSEIHNSSE RKRRDKINKK IRTLKELIPN CHKTDKASML DDAIEYLKTL QLQLQIMSMG  360
RGICMPMNHH MNMNMNMNAQ HLIGFMPPQV QFPIPQQMSG SGNSVTDNIN NIVQMFGFSN  420
QLPPPPLPLP MSIPNAPFLP IIGNSNSTTT NSTFGNKNQP ADRTCGLF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309314ERKRRD
2310315RKRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494480.10.0PREDICTED: transcription factor PIF3
TrEMBLG7KUN61e-113G7KUN6_MEDTR; Helix loop helix DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-21phytochrome interacting factor 3